Index
B
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C
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D
|
E
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F
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G
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I
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L
|
M
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N
|
O
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P
|
R
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S
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T
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V
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W
B
BIDS_DICT (fitlins.generate_dset.DummyDerivatives attribute)
bids_split_filename() (in module fitlins.interfaces.bids)
BIDSDataSink (class in fitlins.interfaces.bids)
BIDSDataSinkInputSpec (class in fitlins.interfaces.bids)
BIDSDataSinkOutputSpec (class in fitlins.interfaces.bids)
BIDSError
BIDSSelect (class in fitlins.interfaces.bids)
BIDSSelectInputSpec (class in fitlins.interfaces.bids)
BIDSSelectOutputSpec (class in fitlins.interfaces.bids)
BIDSWarning
build_report_dict() (in module fitlins.viz.reports)
C
CollateWithMetadata (class in fitlins.interfaces.utils)
CollateWithMetadataInputSpec (class in fitlins.interfaces.utils)
CollateWithMetadataOutputSpec (class in fitlins.interfaces.utils)
collect_participants() (in module fitlins.utils.bids)
ContrastMatrixPlot (class in fitlins.interfaces.visualizations)
ContrastMatrixPlotInputSpec (class in fitlins.interfaces.visualizations)
create_dataset_descriptions() (fitlins.generate_dset.DummyDerivatives method)
create_fname() (fitlins.generate_dset.DerivFuncFileCreator method)
(fitlins.generate_dset.DerivMaskFileCreator method)
(fitlins.generate_dset.EventsFileCreator method)
(fitlins.generate_dset.FuncFileCreator method)
(fitlins.generate_dset.RegressorFileCreator method)
create_glt_test_info() (in module fitlins.interfaces.afni)
create_layout() (fitlins.generate_dset.DummyDerivatives method)
D
decompose_dscalar() (in module fitlins.interfaces.visualizations)
default_path() (in module fitlins.cli.run)
DERIVATIVES_DICT (fitlins.generate_dset.DummyDerivatives attribute)
DerivFuncFileCreator (class in fitlins.generate_dset)
DerivMaskFileCreator (class in fitlins.generate_dset)
deroot() (in module fitlins.viz.reports)
DesignCorrelationPlot (class in fitlins.interfaces.visualizations)
DesignCorrelationPlotInputSpec (class in fitlins.interfaces.visualizations)
DesignMatrix (class in fitlins.interfaces.nistats)
DesignMatrixInputSpec (class in fitlins.interfaces.abstract)
DesignMatrixInterface (class in fitlins.interfaces.abstract)
DesignMatrixOutputSpec (class in fitlins.interfaces.abstract)
DesignPlot (class in fitlins.interfaces.visualizations)
dict_intersection() (in module fitlins.utils.collections)
displayify() (in module fitlins.viz.reports)
dscalar_from_cifti() (in module fitlins.interfaces.nistats)
DummyDerivatives (class in fitlins.generate_dset)
E
EstimatorOutputSpec (class in fitlins.interfaces.abstract)
EventsFileCreator (class in fitlins.generate_dset)
extract_volume() (in module fitlins.interfaces.afni)
F
FILE_PARAMS (fitlins.generate_dset.DerivFuncFileCreator attribute)
(fitlins.generate_dset.DerivMaskFileCreator attribute)
(fitlins.generate_dset.EventsFileCreator attribute)
(fitlins.generate_dset.FuncFileCreator attribute)
(fitlins.generate_dset.RegressorFileCreator attribute)
FirstLevelEstimatorInputSpec (class in fitlins.interfaces.abstract)
FirstLevelEstimatorInterface (class in fitlins.interfaces.abstract)
FirstLevelModel (class in fitlins.interfaces.afni)
(class in fitlins.interfaces.nistats)
fitlins (module)
fitlins.cli (module)
fitlins.cli.run (module)
fitlins.generate_dset (module)
fitlins.interfaces (module)
fitlins.interfaces.abstract (module)
fitlins.interfaces.afni (module)
fitlins.interfaces.bids (module)
fitlins.interfaces.nistats (module)
fitlins.interfaces.utils (module)
fitlins.interfaces.visualizations (module)
fitlins.tests (module)
fitlins.tests.conftest (module)
fitlins.tests.test_outputs (module)
fitlins.utils (module)
fitlins.utils.bids (module)
fitlins.utils.collections (module)
fitlins.utils.config (module)
fitlins.utils.strings (module)
fitlins.viz (module)
fitlins.viz.contrasts (module)
fitlins.viz.corr (module)
fitlins.viz.reports (module)
fitlins.workflows (module)
fitlins.workflows.base (module)
fitlins.workflows.tests (module)
FuncFileCreator (class in fitlins.generate_dset)
G
get_afni_design_matrix() (in module fitlins.interfaces.afni)
get_afni_intent_info() (in module fitlins.interfaces.afni)
get_afni_intent_info_for_subvol() (in module fitlins.interfaces.afni)
get_fitlins_config() (in module fitlins.utils.config)
get_glt_rows() (in module fitlins.interfaces.afni)
get_json_diff() (in module fitlins.tests.test_outputs)
get_nan_diff() (in module fitlins.tests.test_outputs)
get_parser() (in module fitlins.cli.run)
get_stim_labels() (fitlins.interfaces.afni.FirstLevelModel method)
GlassBrainPlot (class in fitlins.interfaces.visualizations)
GlassBrainPlotInputSpec (class in fitlins.interfaces.visualizations)
I
init_data() (fitlins.generate_dset.DerivFuncFileCreator method)
(fitlins.generate_dset.DerivMaskFileCreator method)
(fitlins.generate_dset.EventsFileCreator method)
(fitlins.generate_dset.FuncFileCreator method)
(fitlins.generate_dset.RegressorFileCreator method)
init_fitlins_wf() (in module fitlins.workflows.base)
INIT_MSG() (in module fitlins.cli.run)
input_spec (fitlins.interfaces.abstract.DesignMatrixInterface attribute)
(fitlins.interfaces.abstract.FirstLevelEstimatorInterface attribute)
(fitlins.interfaces.abstract.SecondLevelEstimatorInterface attribute)
(fitlins.interfaces.afni.Pval attribute)
(fitlins.interfaces.bids.BIDSDataSink attribute)
(fitlins.interfaces.bids.BIDSSelect attribute)
(fitlins.interfaces.bids.LoadBIDSModel attribute)
(fitlins.interfaces.bids.ModelSpecLoader attribute)
(fitlins.interfaces.utils.CollateWithMetadata attribute)
(fitlins.interfaces.utils.MergeAll attribute)
(fitlins.interfaces.visualizations.ContrastMatrixPlot attribute)
(fitlins.interfaces.visualizations.DesignCorrelationPlot attribute)
(fitlins.interfaces.visualizations.GlassBrainPlot attribute)
(fitlins.interfaces.visualizations.Visualization attribute)
L
load_bucket_by_prefix() (in module fitlins.interfaces.afni)
LoadBIDSModel (class in fitlins.interfaces.bids)
LoadBIDSModelInputSpec (class in fitlins.interfaces.bids)
LoadBIDSModelOutputSpec (class in fitlins.interfaces.bids)
M
main() (in module fitlins.cli.run)
MergeAll (class in fitlins.interfaces.utils)
ModelSpecLoader (class in fitlins.interfaces.bids)
ModelSpecLoaderInputSpec (class in fitlins.interfaces.bids)
ModelSpecLoaderOutputSpec (class in fitlins.interfaces.bids)
N
NistatsBaseInterface (class in fitlins.interfaces.nistats)
O
output_spec (fitlins.interfaces.abstract.DesignMatrixInterface attribute)
(fitlins.interfaces.abstract.FirstLevelEstimatorInterface attribute)
(fitlins.interfaces.abstract.SecondLevelEstimatorInterface attribute)
(fitlins.interfaces.afni.Pval attribute)
(fitlins.interfaces.bids.BIDSDataSink attribute)
(fitlins.interfaces.bids.BIDSSelect attribute)
(fitlins.interfaces.bids.LoadBIDSModel attribute)
(fitlins.interfaces.bids.ModelSpecLoader attribute)
(fitlins.interfaces.utils.CollateWithMetadata attribute)
(fitlins.interfaces.utils.MergeAll attribute)
(fitlins.interfaces.visualizations.Visualization attribute)
P
parse_afni_ext() (in module fitlins.interfaces.afni)
PATTERN (fitlins.generate_dset.DerivFuncFileCreator attribute)
(fitlins.generate_dset.DerivMaskFileCreator attribute)
(fitlins.generate_dset.EventsFileCreator attribute)
(fitlins.generate_dset.FuncFileCreator attribute)
(fitlins.generate_dset.RegressorFileCreator attribute)
plot_and_save() (in module fitlins.viz)
plot_contrast_matrix() (in module fitlins.viz.contrasts)
plot_corr_matrix() (in module fitlins.viz.corr)
plot_dscalar() (in module fitlins.interfaces.visualizations)
prepare_contrasts() (in module fitlins.interfaces.nistats)
Pval (class in fitlins.interfaces.afni)
PvalInputSpec (class in fitlins.interfaces.afni)
pytest_addoption() (in module fitlins.tests.conftest)
pytest_generate_tests() (in module fitlins.tests.conftest)
R
RegressorFileCreator (class in fitlins.generate_dset)
run_fitlins() (in module fitlins.cli.run)
S
save_remlfit_results() (fitlins.interfaces.afni.FirstLevelModel method)
save_tsnr() (fitlins.interfaces.afni.FirstLevelModel method)
SecondLevelEstimatorInputSpec (class in fitlins.interfaces.abstract)
SecondLevelEstimatorInterface (class in fitlins.interfaces.abstract)
SecondLevelEstimatorOutputSpec (class in fitlins.interfaces.abstract)
SecondLevelModel (class in fitlins.interfaces.nistats)
set_intents() (in module fitlins.interfaces.afni)
snake_to_camel() (in module fitlins.utils.strings)
T
test_get_nan_diff() (in module fitlins.tests.test_outputs)
test_outputs() (in module fitlins.tests.test_outputs)
V
Visualization (class in fitlins.interfaces.visualizations)
VisualizationInputSpec (class in fitlins.interfaces.visualizations)
VisualizationOutputSpec (class in fitlins.interfaces.visualizations)
W
write_bids_derivatives_dataset() (fitlins.generate_dset.DummyDerivatives method)
write_derivative_description() (in module fitlins.utils.bids)
write_file() (fitlins.generate_dset.DerivFuncFileCreator method)
(fitlins.generate_dset.DerivMaskFileCreator method)
(fitlins.generate_dset.EventsFileCreator method)
(fitlins.generate_dset.FuncFileCreator method)
(fitlins.generate_dset.RegressorFileCreator method)
write_full_report() (in module fitlins.viz.reports)
write_metadata() (in module fitlins.generate_dset)
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