Summary

Model

Model specification
{
  "description": "",
  "input": {
    "task": "rhymejudgment"
  },
  "name": "ds003_model001",
  "steps": [
    {
      "contrasts": [
        {
          "condition_list": [
            "trial_type.word",
            "trial_type.pseudoword"
          ],
          "name": "word_gt_pseudo",
          "type": "t",
          "weights": [
            1,
            -1
          ]
        },
        {
          "condition_list": [
            "trial_type.word",
            "trial_type.pseudoword"
          ],
          "name": "task_vs_baseline",
          "type": "t",
          "weights": [
            0.5,
            0.5
          ]
        }
      ],
      "level": "run",
      "model": {
        "x": [
          "trial_type.word",
          "trial_type.pseudoword",
          "framewise_displacement",
          "trans_x",
          "trans_y",
          "trans_z",
          "rot_x",
          "rot_y",
          "rot_z",
          "a_comp_cor_00",
          "a_comp_cor_01",
          "a_comp_cor_02",
          "a_comp_cor_03",
          "a_comp_cor_04",
          "a_comp_cor_05"
        ]
      },
      "transformations": [
        {
          "input": [
            "trial_type"
          ],
          "name": "Factor"
        },
        {
          "input": [
            "trial_type.word",
            "trial_type.pseudoword"
          ],
          "model": "spm",
          "name": "Convolve"
        }
      ]
    },
    {
      "auto_contrasts": [
        "word_gt_pseudo",
        "task_vs_baseline"
      ],
      "level": "dataset"
    }
  ]
}

Run level

Design matrices

A design matrix was generated for each run. All but the first are collapsed, but each should be inspected for correctness.

Subject: 01, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

The correlation matrix of a design matrix shows the correlation between each pair of regressors. Very high or low correlations among variables of interest (top left) or between variables of interest and nuisance regressors (top right) can indicate deficiency in the design. High correlations among nuisance regressors will generally have little effect on the model.

...
Subject: 02, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 03, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 04, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 05, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 06, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 07, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 08, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 09, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 10, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 11, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 12, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Subject: 13, Task: rhymejudgment
The following confounds had NaN values for the first volume: framewise_displacement. The mean of non-zero values for the remaining entries was imputed. If another strategy is desired, it must be explicitly specified in the model.

Correlation matrix

Contrasts

A contrast matrix was generated for each run. Except in very rare cases, these should be identical, so these should be inspected to ensure no unexpected differences are present.

Subject: 01, Task: rhymejudgment
...
Subject: 02, Task: rhymejudgment
Subject: 03, Task: rhymejudgment
Subject: 04, Task: rhymejudgment
Subject: 05, Task: rhymejudgment
Subject: 06, Task: rhymejudgment
Subject: 07, Task: rhymejudgment
Subject: 08, Task: rhymejudgment
Subject: 09, Task: rhymejudgment
Subject: 10, Task: rhymejudgment
Subject: 11, Task: rhymejudgment
Subject: 12, Task: rhymejudgment
Subject: 13, Task: rhymejudgment

Contrasts

Run level

Subject: 01, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 02, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 03, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 04, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 05, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 06, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 07, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 08, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 09, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 10, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 11, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 12, Task: rhymejudgment

word > pseudo

task vs. baseline

Subject: 13, Task: rhymejudgment

word > pseudo

task vs. baseline

Dataset level

Task: rhymejudgment

word > pseudo

task vs. baseline

About